PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G002600.1
Common NameB456_007G002600, LOC105801693
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 380aa    MW: 42961.9 Da    PI: 9.2279
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G002600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.3e-065173123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C++C++ F r  nL+ H r+H
  Gorai.007G002600.1 51 YVCEICNQGFQRDQNLQMHRRRH 73
                        9*********************9 PP

2zf-C2H215.93.8e-05128150123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k +  +s++k H++t+
  Gorai.007G002600.1 128 WVCQKCSKGYAVQSDYKAHLKTC 150
                         58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.18E-54874No hitNo description
Gene3DG3DSA:3.30.160.601.5E-55073IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00525173IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.975173IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
PROSITE patternPS01359053133IPR019786Zinc finger, PHD-type, conserved site
SMARTSM0035519092122IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.7E-4119149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035566128155IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MLPDNSCSSQ PLYLENGSTN NKRKRRPAGT PDPDAEVVSL SPKTLLESDR YVCEICNQGF  60
QRDQNLQMHR RRHKVPWKLL KRETPVVRKR VFVCPEPTCL HHDPCHALGD LVGIKKHFRR  120
KHSNHKQWVC QKCSKGYAVQ SDYKAHLKTC GTRGHSCDCG RVFSRHFLLV FDRVESFIEH  180
QDACHMGRVR QEPQALQPAC LSRTASSHSP SSDTNFSTSP WPSSLMLAKT MDTPSSPQKA  240
QYHNLELQLL TTSSPSPTEA KKYSTQAGEQ LRLAMAEKAY AEEARREAKR QMEIAEQEFG  300
KAKRIRLQAQ AELEKAHDIK EHAIKQIRST MLEITCQACK QQFQARTPLG DKCPVVNYIS  360
SGITEGEVEN DIGAKVTKT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488377.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like isoform X1
SwissprotF4IPE31e-150IDD15_ARATH; Protein SHOOT GRAVITROPISM 5
TrEMBLA0A0D2SBL20.0A0A0D2SBL2_G
STRINGPOPTR_0015s05180.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-136C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]